[DISPLAY PARAMETERIZED DOCK INPUT File] bezek:~/ng/mm/dock_inputs> cat dock_base flexible_ligand $flexible_ligand orient_ligand $orient_ligand score_ligand $score_ligand minimize_ligand $minimize_ligand multiple_ligands $multiple_ligands random_seed $random_seed anchor_search $anchor_search torsion_drive $torsion_drive clash_overlap $clash_overlap conformation_cutoff_factor $conformation_cutoff_factor torsion_minimize $torsion_minimize match_receptor_sites $match_receptor_sites random_search $random_search ligand_centers $ligand_centers maximum_orientations $maximum_orientations write_configurations $write_configurations rank_orientations $rank_orientations rank_orientation_total $rank_orientation_total write_configuration_total $write_configuration_total intramolecular_score $intramolecular_score intermolecular_score $intermolecular_score gridded_score $gridded_score grid_version $grid_version bump_filter $bump_filter bump_maximum $bump_maximum contact_score $contact_score contact_cutoff_distance $contact_cutoff_distance contact_clash_overlap $contact_clash_overlap contact_clash_penalty $contact_clash_penalty chemical_score $chemical_score energy_score $energy_score energy_cutoff_distance $energy_cutoff_distance distance_dielectric $distance_dielectric dielectric_factor $dielectric_factor attractive_exponent $attractive_exponent repulsive_exponent $repulsive_exponent atom_model $atom_model vdw_scale $vdw_scale electrostatic_scale $electrostatic_scale contact_minimize $contact_minimize chemical_minimize $chemical_minimize energy_minimize $energy_minimize initial_translation $initial_translation initial_rotation $initial_rotation initial_torsion $initial_torsion maximum_iterations $maximum_iterations contact_convergence $contact_convergence chemical_convergence $chemical_convergence energy_convergence $energy_convergence maximum_cycles $maximum_cycles ligand_atom_file ${ligand_number}.mol2 receptor_site_file $HOME/dock_inputs_ece/${receptor_site_file} score_grid_prefix $HOME/dock_inputs_ece/${OS}_${score_grid_prefix} vdw_definition_file vdw.defn chemical_definition_file chem.defn chemical_score_file chem_score.tbl flex_definition_file flex.defn flex_drive_file flex_drive.tbl ligand_contact_file dock_cnt.mol2 ligand_chemical_file dock_chm.mol2 ligand_energy_file dock_nrg.mol2 automated_matching $automated_matching